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Wikipedia
Kirk is relieved of command after having violated the Prime Directive to
save Spock's life. Soon after, a secret Starfleet weapons's research facility
is blown up by a mysterious captain Harrison. The latter then attacks the
building where all high-ranking Starfleet officers are gathered to discuss the
first attack. Harrison transports to a uninhabited area of Kronos, the Klingon
homeworld, and Kirk is sent there to blow him up with a set of top-secret,
advanced photon torpedoes. Kirk then decides to catch Harrison instead of
simply blowing up the whole area. Harrison reveals that his is actually Khan,
a bioengineered super-human created 300 years ago and revived in secret by
admiral Marcus to develop weapons. The latter belives that the war with the
Klingon is unavoidable and that Starfleet must become an armed force. Khan
also reveals that he had hidden in the torpedoes the bodies of 72 other
super-humans that he tried to protect from Marcus, who was using them as
hostages to force Khan to work for him. Soon after leaving Kronos, Enterprise
is attacked by a mysterious Starfleet ship, heavily armed, and commanded by
Marcus. The latter wants Khan and the super-humans back. After boarding the
ship with Kirk, Khan takes control and sends Kirk back to Enterprise in
exchange for the torpedoes. Enterprise escapes towards Earth, chased by Khan
who has discovered that the torpedoes are empty but armed, and disable the
ship. Khan then crashe onto Starfleet's headquarter, while Kirk, in an attempt
to prevent Enterprise to do the same, dies from radiation poisoning repairing
the engine. Spock then chases Khan (who had survived the crash) to take a
sample of his blood, ther latter having regenerative properties, and saves
Kirk's life. Some time later, Kirk and Enterprise leave for a five year exploration
mission.